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Polymorphisms in relation to type of EST-SSRs derived from Chinese
日期:2017-05-11 15:24:24  发布人:admin  浏览量:531
  •     【题    目】:Polymorphisms in relation to type of EST-SSRs derived from Chinese bayberry (Myrica rubra, Myricaceae) transcriptome
  •     【作    者】:Zhang SY,  Li X,Feng C,Zhu CQ,Grierson DXu CJ,Chen KS.
  •     【刊物卷期】:Genetics and Molecular Research.2015,142).
  •     【论文级别】:SCI 
  •     【摘    要】: PREMISE OF THE STUDY:In Chinese bayberry (Myrica rubra), the available simple sequence repeat (SSR) markers are insufficient to meet the developing demand for genetic and molecular breeding research. This study was aimed at developing a large number of polymorphic expressed sequence tag (EST)-SSRs from the transcriptome of Chinese bayberry. 

    METHODS AND RESULTS:Five hundred ninety-four compound EST-SSRs and 5557 noncompound ones were identified from 41239 unigene sequences generated from the transcriptome of M. rubra cv. Biqi. Using 10 Chinese bayberry cultivars, 109 polymorphic EST-SSRs were screened from 412 selected. In total, they generated 389 alleles, with a polymorphism ratio of 93.8%. In addition, it was observed that the polymorphism levels of compound EST-SSRs were somewhat lower than those of noncompound ones.

    CONCLUSIONS:The 109 polymorphic EST-SSRs developed from the Chinese bayberry transcriptome should greatly promote the development of genetic and molecular breeding studies in this as well as other Myricaceae species.

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